PXD013040-3

PXD013040 is an original dataset announced via ProteomeXchange.

Title	Model data for the evaluation of dependent-peptide visualisation tools
Description	Dependent peptide searching is a method for detecting modified peptides using data from shotgun proteomics analyses. We have developed a set of tools for visualising the results of dependent-peptide searches (as performed in MaxQuant). The tools were developed using four sets of search results: two sets for a sample of N-ethylmaleimide-treated bovine serum albumin (BSA), and two sets for a corresponding control sample (replicates = different LC-MS/MS analyses). This submission includes our raw data, MaxQuant output files, and a *.fasta file containing the sequence of mature BSA. An accompanying *.csv file summarises the structure of the data set.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:07:34.865.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	George Preston
SpeciesList	scientific name: Bos taurus (Bovine); NCBI TaxID: 9913;
ModificationList	N-ethylmaleimide derivatized cysteine; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-11 04:25:00	ID requested
1	2020-06-21 22:36:17	announced
2	2020-08-18 06:23:44	announced	2020-08-18: Updated publication reference for PubMed record(s): 32639981.
⏵ 3	2024-10-22 05:07:37	announced	2024-10-22: Updated project metadata.

Preston GW, Yang L, Phillips DH, Maier CS, Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications. PLoS One, 15(7):e0235263(2020) [pubmed]

10.1371/journal.pone.0235263;

curator keyword: Technical

submitter keyword: LC-MSMS, PTMs, Bos taurus,Dependent peptides

Claudia S. Maier
contact affiliation	Department of Chemistry, Oregon State University
contact email	claudia.maier@oregonstate.edu
lab head
George Preston
contact affiliation	King's College London
contact email	george.preston@kcl.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD013040

PRIDE project URI

• PRIDE
  1. PXD013040
     1. Label: PRIDE project
     2. Name: Model data for the evaluation of dependent-peptide visualisation tools