PXD012859-2

PXD012859 is an original dataset announced via ProteomeXchange.

Title	Sloth collagen phylogenetics - The living tree sloths Choloepus and Bradypus are the only remaining members of Folivora, a major xenarthran radiation that occupied a wide range of habitats in many parts of the western hemisphere during the Cenozoic, including both continents and the West Indies (Antilles)
Description	The living tree sloths Choloepus and Bradypus are the only remaining members of Folivora, a major xenarthran radiation that occupied a wide range of habitats in many parts of the western hemisphere during the Cenozoic, including both continents and the West Indies (Antilles). To date, molecular evidence has played only a minor role in folivoran systematics, as most recently-extinct species lived in places not conducive to DNA preservation. Here we utilize collagen sequence information to assess the relationships of tree sloths to a large sample (13 species) of extinct Quaternary folivorans.
HostingRepository	PRIDE
AnnounceDate	2020-03-12
AnnouncementXML	Submission_2020-03-12_03:47:05.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Samantha Presslee
SpeciesList	scientific name: Mylodontidae; NCBI TaxID: 48781; scientific name: Megalonychidae; NCBI TaxID: 227508; scientific name: Mylodon darwinii (Giant ground sloth); NCBI TaxID: 48784; scientific name: Cingulata; NCBI TaxID: 948951; scientific name: Bradypus variegatus; NCBI TaxID: 9355; scientific name: Choloepus hoffmanni; NCBI TaxID: 9358; scientific name: Nothrotheriops shastensis; NCBI TaxID: 136416; scientific name: Megatheriidae; NCBI TaxID: 136417;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Orbitrap Fusion Lumos; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-25 01:56:44	ID requested
1	2019-06-07 01:10:35	announced
⏵ 2	2020-03-12 03:47:07	announced	2020-03-12: Updated project metadata.
3	2024-10-22 04:53:41	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: Sloth, Collagen, Proteomics, Phylogenetics

Matthew Collins
contact affiliation	BioArCh, Department of Archaeology, University of York (Until 2018)
contact email	matthew@palaeome.org
lab head
Samantha Presslee
contact affiliation	University of York
contact email	slp534@york.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD012859

PRIDE project URI

• PRIDE
  1. PXD012859
     1. Label: PRIDE project
     2. Name: Sloth collagen phylogenetics - The living tree sloths Choloepus and Bradypus are the only remaining members of Folivora, a major xenarthran radiation that occupied a wide range of habitats in many parts of the western hemisphere during the Cenozoic, including both continents and the West Indies (Antilles)