PXD012577 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Time-dependent analysis of Paenarthrobacter nicotinovorans pAO1 nicotine-related proteome |
Description | We used nanoLC–MS/MS in a shotgun proteomics approach in order to identify the proteins expressed by P. nicotinovorans in the presence of nicotine at 3 different time intervals: 7, 10 and 24 hours post inoculation. A total of 915 proteins grouped 584 non-redundant clusters in were identified with an FDR of 0.3% when P. nicotinovorans was grown in on citrate medium alone and on citrate supplemented 0.05% nicotine. The differences in protein expression pattens at different time intervals allows us have a more dynamic picture on how the nicotine catabolic pathway is activated and to related it to the appearance of the known metabolic intermediates. |
HostingRepository | PRIDE |
AnnounceDate | 2021-06-01 |
AnnouncementXML | Submission_2021-06-15_22:27:26.884.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD012577 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Marius Mihasan |
SpeciesList | scientific name: Paenarthrobacter nicotinovorans; NCBI TaxID: 29320; |
ModificationList | Oxidation; Carbamidomethyl |
Instrument | Xevo G2 Q-Tof |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-01-31 23:25:07 | ID requested | |
1 | 2021-06-01 07:08:13 | announced | |
⏵ 2 | 2021-06-15 22:27:27 | announced | 2021-06-16: Updated publication reference for PubMed record(s): 34124447. |
Publication List
Mih, ă, ş, an M, Boiangiu R Ş, Guzun D, Babii C, Aslebagh R, Channaveerappa D, Dupree E, Darie CC, pAO1 Nicotine-Related Proteome. ACS Omega, 6(22):14242-14251(2021) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Paenarthrobacter nicotinovorans, nicotine, metabolism, citrate medium |
Contact List
Costel C. Darie |
contact affiliation | Biochemistry & Proteomics Group Department of Chemistry & Biomolecular Science, Clarkson University 8 Clarkson Avenue, Potsdam, NY, 13699-5810, USA Office: (315) 268-7763; Lab: (315) 268-2348; Fax: (315) 268-6610 |
contact email | cdarie@clarkson.edu |
lab head | |
Marius Mihasan |
contact affiliation | Alexandru Ioan Cuza University of Iasi |
contact email | marius.mihasan@uaic.ro |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD012577 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD012577
- Label: PRIDE project
- Name: Time-dependent analysis of Paenarthrobacter nicotinovorans pAO1 nicotine-related proteome