PXD012461-1

PXD012461 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	The potential role of the collagen gene family in congenital Zika syndrome: A systems biology approach
Description	In this study, we have generated genomic, transcriptomic and proteomic data from the blood and post-mortem brain samples of eight neonates with confirmed ZIKV infection during pregnancy and with no congenital genetic diseases nor another STORCH group vertical transmission.
HostingRepository	PRIDE
AnnounceDate	2020-05-20
AnnouncementXML	Submission_2020-05-19_22:49:47.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Proteomics Unit
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-01-22 03:08:12	ID requested
⏵ 1	2020-05-19 22:49:48	announced
2	2024-10-22 05:04:17	announced	2024-10-22: Updated project metadata.

Publication List

Agtuca BJ, Stopka SA, Evans S, Samarah L, Liu Y, Xu D, Stacey MG, Koppenaal DW, Pa, š, a-Toli, ć L, Anderton CR, Vertes A, Stacey G, Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism. Plant J, 103(5):1937-1958(2020) [pubmed]

Agtuca BJ, Stopka SA, Evans S, Samarah L, Liu Y, Xu D, Stacey MG, Koppenaal DW, Pa, š, a-Toli, ć L, Anderton CR, Vertes A, Stacey G, Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism. Plant J, 103(5):1937-1958(2020) [pubmed]

Keyword List

submitter keyword: Zika
Microcephaly
Systems Biology
Collagen

submitter keyword: Zika

Microcephaly

Systems Biology

Collagen

Contact List

Fabio Nogueira
contact affiliation	Proteomics Unit, Chemistry Institute, Federal University of Rio de Janeiro
contact email	fabiocsn@gmail.com
lab head
Proteomics Unit
contact affiliation	UFRJ
contact email	unidadeproteomica@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD012461
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD012461

PRIDE project URI

Repository Record List

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