PXD012226 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Application of data-independent acquisition approach to study the proteome dynamics of plant pathogenesis responses |
Description | Plants and pathogens are entangled in a continual arms race. The plants are evolved to have a dynamic defense and immune mechanisms to resist the infection and enhance the immunity for the second wave attacks from the same or different type of pathogenic species. Not only in the evolutionally or physiologically, the plant-pathogen interaction is also highly dynamic in the molecular level. Recently, the emerging quantitative mass spectrometry-based proteomics approach, data-independent acquisition (DIA), was developed for the analysis of proteome in a high throughput fashion. In this study, the DIA approach was applied to quantitatively trace the change of the plant proteome from the early to late stage of pathogenesis progression. This study revealed that the early stage of the pathogenesis response, the proteins directly related to the chaperon for the defense proteins. In the later stage, not only the defense proteins but also a set of the pathogen associate molecular pattern triggered immunity (PTI), effector triggered immunity (ETI) related proteins were highly induced. Our finding showed the dynamics of the regulation in protein level and demonstrated that the potential of using DIA approach for tracing the dynamics of the plant proteome during pathogenesis responses. |
HostingRepository | PRIDE |
AnnounceDate | 2019-02-18 |
AnnouncementXML | Submission_2019-02-18_08:21:46.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Wei-Hung Chang |
SpeciesList | scientific name: Solanum lycopersicum; NCBI TaxID: 4081; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-01-03 03:52:37 | ID requested | |
⏵ 1 | 2019-02-18 08:21:47 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: Plant pathogenesis responses, data-independent acquisition, quantitative proteomics, Pseudomonas syringae |
Contact List
Yet-Ran Chen |
contact affiliation | Academia Sinica |
contact email | yetran@gate.sinica.edu.tw |
lab head | |
Wei-Hung Chang |
contact affiliation | Academia Sinica |
contact email | whchang@gate.sinica.edu.tw |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/02/PXD012226 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD012226
- Label: PRIDE project
- Name: Application of data-independent acquisition approach to study the proteome dynamics of plant pathogenesis responses