PXD012069 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The FGF4-dependent phosphoproteome in mouse embryonic stem cells |
Description | Protein kinase signalling is a major mechanism by which embryonic stem cell pluripotency and differentiation is controlled. However, the pathways and components that regulate embryonic stem cell identity have not been systematically defined. Here, we employ FGF4 signalling as a model system to investigate phosphoproteome dynamics in differentiating mouse embryonic stem cells. We report identification and quantitation of more than 10,000 phosphopeptides, of which hundreds of phosphophoylation sites are regulated more than 2-fold by acute FGF4 stimulation. We hypothesise that phosphorylation sites in this dataset are relevant for regulating the transition of mouse embryonic stem cells from pluripotency towards lineage specific differentiation. |
HostingRepository | PRIDE |
AnnounceDate | 2020-02-24 |
AnnouncementXML | Submission_2020-05-18_06:52:34.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Houjiang Zhou |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | phosphorylated residue; monohydroxylated residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-12-14 05:04:11 | ID requested | |
1 | 2020-02-24 00:13:05 | announced | |
⏵ 2 | 2020-05-18 06:52:35 | announced | 2020-05-18: Updated publication reference for PubMed record(s): 32170114. |
3 | 2024-10-22 03:59:53 | announced | 2024-10-22: Updated project metadata. |
Publication List
Fernandez-Alonso R, Bustos F, Budzyk M, Kumar P, Helbig AO, Hukelmann J, Lamond AI, Lanner F, Zhou H, Petsalaki E, Findlay GM, Phosphoproteomics identifies a bimodal EPHA2 receptor switch that promotes embryonic stem cell differentiation. Nat Commun, 11(1):1357(2020) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Kinase, phosphorylation, growth factor, mouse embryonic stem cell |
Contact List
Greg Findlay |
contact affiliation | The MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, The University of Dundee, Dundee DD1 5EH, UK |
contact email | g.m.findlay@dundee.ac.uk |
lab head | |
Houjiang Zhou |
contact affiliation | University of Dundee |
contact email | h.y.zhou@dundee.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD012069
- Label: PRIDE project
- Name: The FGF4-dependent phosphoproteome in mouse embryonic stem cells