PXD011680 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Intermolecular Architecture of Fibrin Clots and its Interaction INterface with Albumin |
| Description | In this project we establish the unit cell of fibrin polymer network by using of XL-MS methods and modelling approaches. With shotgun proteomics approach we estimate the ratio of proteins in the purified Fibrin Clots and ratio of Albumin inter- and intralinks |
| HostingRepository | PRIDE |
| AnnounceDate | 2020-01-09 |
| AnnouncementXML | Submission_2020-02-17_02:25:49.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Oleg Klykov |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | Orbitrap Fusion Lumos; Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2018-11-13 05:36:02 | ID requested | |
| 1 | 2020-01-09 10:15:41 | announced | |
| 2 | 2020-01-17 06:12:20 | announced | 2020-01-17: Updated publication reference for PubMed record(s): 31924745. |
| ⏵ 3 | 2020-02-17 02:25:51 | announced | 2020-01-17: Updated publication reference for PubMed record(s): 31924745.
2020-02-17: Updated publication reference for PubMed record(s): 31924745. |
| 4 | 2020-11-06 08:13:19 | announced | 2020-11-06: Updated project metadata. |
| 5 | 2022-02-13 16:19:16 | announced | 2022-02-14: Updated project metadata. |
| 6 | 2022-02-13 16:27:29 | announced | 2022-02-14: Updated project metadata. |
| 7 | 2024-10-22 04:55:08 | announced | 2024-10-22: Updated project metadata. |
Publication List
| Klykov O, van der Zwaan C, Heck AJR, Meijer AB, Scheltema RA, Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling. Proc Natl Acad Sci U S A, 117(4):1976-1987(2020) [pubmed] |
Keyword List
| submitter keyword: XL-MS, DSSO, Modeling, Docking, Fibrin, Fibrinogen, Albumin |
Contact List
| Albert J. R. Heck |
|---|
| contact affiliation | Distinguished Faculty Professor Utrecht University Scientific Director Netherlands Proteomics Centre and Scientific Director Utrecht Institute for Pharmaceutical Sciences Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8, 3584 CH Utrecht, The Netherlands |
| contact email | A.J.R.Heck@uu.nl |
| lab head | |
| Oleg Klykov |
|---|
| contact affiliation | Utrecht University |
| contact email | o.klykov@uu.nl |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD011680 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011680
- Label: PRIDE project
- Name: Intermolecular Architecture of Fibrin Clots and its Interaction INterface with Albumin
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