PXD011556 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Bacteriocin LC-MSMS . |
Description | This is the first report of a bacteriocin being produced by lactobacillus acidophilus ATCC 4356. For protein identification, the ~8-kDa peptide band was removed from the acrylamide gel and digested in-gel by trypsin, and the resulting peptide fragments were extracted and analyzed by LC-MS/MS analysis. The MS data were processed using Thermo Proteome Discoverer software (v2.2) with the SEQUEST search engine. Three peptides, VAHCASQIGR (amino acids 23-32), GSAACVSYLTR (amino acids 69-79), GSAACVSYLTRHRHH (amino acids 69-83) were identified as tryptic fragments on the basis of LC-MS/MS.This is the first report of a bacteriocin being produced by lactobacillus acidophilus ATCC 4356. For protein identification, the ~8-kDa peptide band was removed from the acrylamide gel and digested in-gel by trypsin, and the resulting peptide fragments were extracted and analyzed by LC-MS/MS analysis. The MS data were processed using Thermo Proteome Discoverer software (v2.2) with the SEQUEST search engine. Three peptides, VAHCASQIGR (amino acids 23-32), GSAACVSYLTR (amino acids 69-79), GSAACVSYLTRHRHH (amino acids 69-83) were identified as tryptic fragments on the basis of LC-MS/MS. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-07 |
AnnouncementXML | Submission_2024-10-07_10:20:26.038.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sima Modiri |
SpeciesList | scientific name: Lactobacillus acidophilus; NCBI TaxID: 1579; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-11-01 03:13:06 | ID requested | |
⏵ 1 | 2024-10-07 10:20:26 | announced | |
Publication List
10.1128/aem.00367-20; |
Modiri S, Kasra Kermanshahi R, Soudi MR, Arab SS, Khammari A, Cousineau B, Vali H, Zahiri HS, Noghabi KA, through Membrane Perturbation and Virulence Attenuation: Experimental Results Confirm Molecular Dynamics Simulation. Appl Environ Microbiol, 86(10):(2020) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Lactobacillus acidophilus atcc 4356,Bacteriocin |
Contact List
Kambiz Akbari Noghabi |
contact affiliation | Division of Industrial & Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), P. O. Box 14155-6343, Tehran, Iran |
contact email | akbari@nigeb.ac.ir |
lab head | |
Sima Modiri |
contact affiliation | NIGEB |
contact email | modiri.sima@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011556
- Label: PRIDE project
- Name: Bacteriocin LC-MSMS