PXD011524-2

PXD011524 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic analysis of human alveolar bone
Description	We optimised a sample preparation and analysis workflow for proteomic analysis of human alveolar bone. We compared the peptides and proteins extracted from bone by different buffers, then used a multi-enzyme, multi-search engine approach to increase proteome coverage.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:50:02.375.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Peter Bell
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); hydroxylated proline; N-ethylmaleimide derivatized cysteine; 2-pyrrolidone-5-carboxylic acid (Gln); monohydroxylated residue; acetylated residue; dimethylated residue
Instrument	impact II

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-10-30 03:55:21	ID requested
1	2019-11-28 00:07:25	announced
⏵ 2	2024-10-22 04:50:04	announced	2024-10-22: Updated project metadata.

Publication List

Bell PA, Solis N, Kizhakkedathu JN, Matthew I, Overall CM, Proteomic and N-Terminomic TAILS Analyses of Human Alveolar Bone Proteins: Improved Protein Extraction Methodology and LysargiNase Digestion Strategies Increase Proteome Coverage and Missing Protein Identification. J Proteome Res, 18(12):4167-4179(2019) [pubmed]
10.1021/acs.jproteome.9b00445;

Bell PA, Solis N, Kizhakkedathu JN, Matthew I, Overall CM, Proteomic and N-Terminomic TAILS Analyses of Human Alveolar Bone Proteins: Improved Protein Extraction Methodology and LysargiNase Digestion Strategies Increase Proteome Coverage and Missing Protein Identification. J Proteome Res, 18(12):4167-4179(2019) [pubmed]

10.1021/acs.jproteome.9b00445;

Keyword List

curator keyword: Biological
submitter keyword: Human, bone, TAILS, shotgun, missing protein

curator keyword: Biological

submitter keyword: Human, bone, TAILS, shotgun, missing protein

Contact List

Christopher M Overall
contact affiliation	Centre for Blood Research ; Oral & Biomedical Sciences University of British Columbia Canada
contact email	chris.overall@ubc.ca
lab head
Peter Bell
contact affiliation	UBC
contact email	peter.bell@ubc.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011524
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011524

PRIDE project URI

Repository Record List

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