PXD011268 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics of psychrotolerant Trichococcus patagoniensis and characterization of the produced exopolysaccharides as inulin |
Description | The psychrotolerant Trichococcus patagoniensis was previously reported to produce exopolysaccharides (EPS) that covers the cells, when grown at a low temperature. Although, T. patagoniensis has an optimal growth at 30 ºC, it still can grow at -5 ºC. This capability of T. patagoniensis to grow at subzero temperatures is expected to be reflected in the proteome, membrane lipid composition and/or EPS production. This study aimed to get insight into the cold adaptation mechanisms of T. patagoniensis. We compared the proteomes of cells grown at 0 and 30 ºC and the EPS that is formed. |
HostingRepository | PRIDE |
AnnounceDate | 2022-08-12 |
AnnouncementXML | Submission_2022-08-12_02:27:20.018.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sjef Boeren |
SpeciesList | scientific name: Trichococcus patagoniensis; NCBI TaxID: 382641; |
ModificationList | monohydroxylated residue; acetylated residue; deamidated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-10-03 08:06:43 | ID requested | |
⏵ 1 | 2022-08-12 02:27:20 | announced | |
Publication List
Doloman A, Boeren S, Miller CD, Sousa DZ, . Appl Environ Microbiol, 88(13):e0039122(2022) [pubmed] |
Keyword List
submitter keyword: cold-adaption, psychrophilic, glucose, cold-shock, sub-zero, lipids, genomics |
Contact List
Sjef Boeren |
contact affiliation | Wageningen University |
contact email | sjef.boeren@wur.nl |
lab head | |
Sjef Boeren |
contact affiliation | Biochemistry |
contact email | sjef.boeren@wur.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD011268 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011268
- Label: PRIDE project
- Name: Proteomics of psychrotolerant Trichococcus patagoniensis and characterization of the produced exopolysaccharides as inulin