PXD011200 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Thermal proteome profiling of Arabidopsis thaliana |
Description | Six biological replicates of Arabidopsis thaliana were subjected to protein extraction, ten-temperature gradient precipitation, TMT labeling, off-line alkaline fractionation, and LC-MS/MS. The resulting data was used downstream for untargeted modeling of protein unfolding and melting temperature estimation. |
HostingRepository | PRIDE |
AnnounceDate | 2018-11-23 |
AnnouncementXML | Submission_2018-11-23_07:06:19.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jeremy Volkening |
SpeciesList | scientific name: Arabidopsis thaliana; NCBI TaxID: 3702; |
ModificationList | L-methionine sulfoxide; S-carboxamidomethyl-L-cysteine; TMT6plex-126 reporter+balance reagent acylated N-terminal; deamidated L-asparagine; deamidated L-glutamine; TMT6plex-126 reporter+balance reagent N6-acylated lysine |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-09-27 03:47:27 | ID requested | |
⏵ 1 | 2018-11-23 07:06:20 | announced | |
2 | 2019-06-03 01:36:16 | announced | Updated publication reference for PubMed record(s): 30401684. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Arabidopsis,LC-MS,TPP |
Contact List
Michael R Sussman |
contact affiliation | University of Wisconsin-Madison |
contact email | msussman@wisc.edu |
lab head | |
Jeremy Volkening |
contact affiliation | University of Wisconsin-Madison |
contact email | volkening@wisc.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD011200 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011200
- Label: PRIDE project
- Name: Thermal proteome profiling of Arabidopsis thaliana