PXD010003 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | CASP XL-MS target H0957 (ID31): Cross-linking for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13) |
Description | Chemical cross-linking coupled to mass spectrometry was used to provide distance restraints for different homo- and heterooligomeric complexes as part of the CASP13 experiment (https://www.predictioncenter.org/casp13/index.cgi). |
HostingRepository | PRIDE |
AnnounceDate | 2019-10-07 |
AnnouncementXML | Submission_2019-10-07_00:34:13.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Alexander Leitner |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-06-01 02:59:39 | ID requested | |
⏵ 1 | 2019-10-07 00:34:16 | announced | |
Publication List
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczy, ń, ska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pag, è, s G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A, Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins, 87(12):1283-1297(2019) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: Chemical cross-linking |
DSS |
PDH |
DMTMM |
structural proteomics |
CASP |
Contact List
Alexander Leitner |
contact affiliation | Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland |
contact email | leitner@imsb.biol.ethz.ch |
lab head | |
Alexander Leitner |
contact affiliation | ETH Zurich, Institute of Molecular Systems Biology |
contact email | leitner@imsb.biol.ethz.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010003
- Label: PRIDE project
- Name: CASP XL-MS target H0957 (ID31): Cross-linking for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)