PXD009738-2

PXD009738 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Immunopeptidomic profiling of HLA-A2-positive triple negative breast cancer
Description	Here we analysed the immunopeptidomes of 6 HLA-A2-positive triple negative breast cancer (TNBC) samples by nano-ultra performance liquid chromatography tandem mass spectrometry (nUPLC-MS2).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:44:59.819.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD009738
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Nicola Ternette
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	GG; Amidated; Diethyl; Cys->Dha; Lys->AminoadipicAcid; Ethanolyl; Propionamide; Phospho; GlycerylPE; Hep; PhosphoHex; Hex(1)HexNAc(1); Deamidated; sulfo+amino; Acetyl; Trp->Oxolactone; Methylthio; HexNAc; Carbamidomethyl; Cation:Ca[II]; Cysteinyl; Gln->pyro-Glu; Met->Hsl; Trioxidation; Glu->pyro-Glu; DAET; DeStreak; Delta:H(2)C(2); Trimethyl; Cation:Li; Ethyl; HydroxymethylOP; Methyl; AEBS; Oxidation; Carboxy; Ethanedithiol; Ethanolamine; Didehydro; Cation:Na; Trp->Kynurenin; Pro->Pyrrolidinone; Trp->Hydroxykynurenin; Sulfo; Glutathione; Formyl; Carbamyl; Lys->Allysine; maleimide; Ammonium; Dehydrated; Biotin; Dimethyl; Dioxidation; Menadione; Carbofuran; Delta:H(5)C(2); Hex(2); glycidamide
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-05-10 03:00:52	ID requested
1	2018-06-29 09:52:03	announced
⏵ 2	2024-10-22 04:45:07	announced	2024-10-22: Updated project metadata.

Publication List

10.1002/pmic.201700465;
10.6019/PXD009738;
Ternette N, Olde Nordkamp MJM, M, ü, ller J, Anderson AP, Nicastri A, Hill AVS, Kessler BM, Li D, Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens. Proteomics, 18(12):e1700465(2018) [pubmed]

10.1002/pmic.201700465;

10.6019/PXD009738;

Ternette N, Olde Nordkamp MJM, M, ü, ller J, Anderson AP, Nicastri A, Hill AVS, Kessler BM, Li D, Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens. Proteomics, 18(12):e1700465(2018) [pubmed]

Keyword List

ProteomeXchange project tag: Biology/Disease-Driven Human Proteome Project (B/D-HPP), Breast Cancer
curator keyword: Biomedical
submitter keyword: HLA-A2,Immunopeptidomics, TNBC

ProteomeXchange project tag: Biology/Disease-Driven Human Proteome Project (B/D-HPP), Breast Cancer

curator keyword: Biomedical

submitter keyword: HLA-A2,Immunopeptidomics, TNBC

Contact List

Dr Nicola Maria Nathalie Ternette
contact affiliation	University of Oxford, The Jenner Inistitute
contact email	nicola.ternette@ndm.ox.ac.uk
lab head
Nicola Ternette
contact affiliation	University of Oxford
contact email	nicola.ternette@ndm.ox.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD009738

PRIDE project URI

Repository Record List

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