PXD009716-2

PXD009716 is an original dataset announced via ProteomeXchange.

Title	glyXtoolMS Example Data Sets
Description	The data sets of human IgG and human fibrinogen are used as test data for the publication of glyXtoolMS (https://github.com/glyXera/glyXtoolMS). GlyXtoolMS is an open-source analysis software for the (semi)automated targeted analysis of glycopeptide mass spectrometry data using OpenMS/TOPPAS as a framework and pipeline engine. The proteins were selected to show the successful analysis of both N-glycopeptide and O-glycopeptide samples. The samples were measured by nano reversed phase liquid chromatography coupled online to an electrospray ionization orbitrap mass spectrometer (nano RP-LC ESI- OT-MS/MS; LTQ Orbitrap Elite, Thermo Scientific, Waltham, MA, USA) with HCD fragmentation.
HostingRepository	PRIDE
AnnounceDate	2018-09-24
AnnouncementXML	Submission_2018-09-26_23:55:21.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Markus Pioch
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2018-05-08 08:59:54	ID requested
1	2018-09-24 01:22:25	announced
⏵ 2	2018-09-26 23:55:23	announced	Updated publication reference for PubMed record(s): 30252445.
3	2024-10-22 04:45:00	announced	2024-10-22: Updated project metadata.

Pioch M, Hoffmann M, Pralow A, Reichl U, Rapp E, : An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data. Anal Chem, 90(20):11908-11916(2018) [pubmed]

curator keyword: Technical, Biological

submitter keyword: human immunoglobulin gamma, human fibrinogen, glyXtoolMS, glycosylation, LTQ Orbitrap Elite

Erdmann Rapp
contact affiliation	Max Planck Institute for Dynamics of Complex Technical Systems Magdeburg, 39106, Germany
contact email	rapp@mpi-magdeburg.mpg.de
lab head
Markus Pioch
contact affiliation	Max Planck Institute for Dynamics of Complex Technical Systems
contact email	pioch@mpi-magdeburg.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD009716

PRIDE project URI

• PRIDE
  1. PXD009716
     1. Label: PRIDE project
     2. Name: glyXtoolMS Example Data Sets