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PXD009716-2

PXD009716 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleglyXtoolMS Example Data Sets
DescriptionThe data sets of human IgG and human fibrinogen are used as test data for the publication of glyXtoolMS (https://github.com/glyXera/glyXtoolMS). GlyXtoolMS is an open-source analysis software for the (semi)automated targeted analysis of glycopeptide mass spectrometry data using OpenMS/TOPPAS as a framework and pipeline engine. The proteins were selected to show the successful analysis of both N-glycopeptide and O-glycopeptide samples. The samples were measured by nano reversed phase liquid chromatography coupled online to an electrospray ionization orbitrap mass spectrometer (nano RP-LC ESI- OT-MS/MS; LTQ Orbitrap Elite, Thermo Scientific, Waltham, MA, USA) with HCD fragmentation.
HostingRepositoryPRIDE
AnnounceDate2018-09-24
AnnouncementXMLSubmission_2018-09-26_23:55:21.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMarkus Pioch
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-05-08 08:59:54ID requested
12018-09-24 01:22:25announced
22018-09-26 23:55:23announcedUpdated publication reference for PubMed record(s): 30252445.
Publication List
Pioch M, Hoffmann M, Pralow A, Reichl U, Rapp E, : An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data. Anal Chem, 90(20):11908-11916(2018) [pubmed]
Keyword List
curator keyword: Technical, Biological
submitter keyword: human immunoglobulin gamma, human fibrinogen, glyXtoolMS, glycosylation, LTQ Orbitrap Elite
Contact List
Erdmann Rapp
contact affiliationMax Planck Institute for Dynamics of Complex Technical Systems Magdeburg, 39106, Germany
contact emailrapp@mpi-magdeburg.mpg.de
lab head
Markus Pioch
contact affiliationMax Planck Institute for Dynamics of Complex Technical Systems
contact emailpioch@mpi-magdeburg.mpg.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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