PXD009716 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | glyXtoolMS Example Data Sets |
Description | The data sets of human IgG and human fibrinogen are used as test data for the publication of glyXtoolMS (https://github.com/glyXera/glyXtoolMS). GlyXtoolMS is an open-source analysis software for the (semi)automated targeted analysis of glycopeptide mass spectrometry data using OpenMS/TOPPAS as a framework and pipeline engine. The proteins were selected to show the successful analysis of both N-glycopeptide and O-glycopeptide samples. The samples were measured by nano reversed phase liquid chromatography coupled online to an electrospray ionization orbitrap mass spectrometer (nano RP-LC ESI- OT-MS/MS; LTQ Orbitrap Elite, Thermo Scientific, Waltham, MA, USA) with HCD fragmentation. |
HostingRepository | PRIDE |
AnnounceDate | 2018-09-24 |
AnnouncementXML | Submission_2018-09-26_23:55:21.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Markus Pioch |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-05-08 08:59:54 | ID requested | |
1 | 2018-09-24 01:22:25 | announced | |
⏵ 2 | 2018-09-26 23:55:23 | announced | Updated publication reference for PubMed record(s): 30252445. |
Publication List
Pioch M, Hoffmann M, Pralow A, Reichl U, Rapp E, : An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data. Anal Chem, 90(20):11908-11916(2018) [pubmed] |
Keyword List
curator keyword: Technical, Biological |
submitter keyword: human immunoglobulin gamma, human fibrinogen, glyXtoolMS, glycosylation, LTQ Orbitrap Elite |
Contact List
Erdmann Rapp |
contact affiliation | Max Planck Institute for Dynamics of Complex Technical Systems Magdeburg, 39106, Germany |
contact email | rapp@mpi-magdeburg.mpg.de |
lab head | |
Markus Pioch |
contact affiliation | Max Planck Institute for Dynamics of Complex Technical Systems |
contact email | pioch@mpi-magdeburg.mpg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009716
- Label: PRIDE project
- Name: glyXtoolMS Example Data Sets