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PXD009633-1

PXD009633 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteome Profiling of PBMC-originated, iPSC-derived Lentoid Bodies at differentiation day 35
DescriptionDifferentiation of pluripotent stem cells into lentoid bodies is important for the understanding of the lens development and investigating the processes critical for lens morphogenesis. This Study was initiated to investigate a comprehensive proteome profiling of the peripheral blood mononuclear cell (PBMC)-originated, induced pluripotent stem cell (iPSC)-derived lentoid bodies through mass spectrometry-based protein sequencing. Briefly, a small aliquot of blood sample was ascertained to collect PBMCs that were reprogrammed to iPSCs using the Sendai-virus delivery system. The PBMC-originated, iPSCs were differentiated into lentoid bodies employing the “fried egg” method using feeder-free conditions. The quantitative real-time PCR (qRT-PCR) confirmed the expression of lens-associated markers, which exhibited at least an order magnitude increased expression in lentoid bodies at differentiation day 35. Subsequently, the total cellular protein was extracted from lentoid bodies at day 35, digested with trypsin, fractionated into 96 fractions and subjected to an mass spectrometry-based label-free quantitative proteomics. mass spectrometry-based proteome profiling revealed 9,717 proteins in iPSC-derived lentoid bodies at differentiation day 35. In here, we report a comprehensive proteome of PBMC-originated, iPSC-derived lentoid bodies at day 35, which will help in better understanding processes critical for the development of the ocular lens.
HostingRepositoryPRIDE
AnnounceDate2022-02-28
AnnouncementXMLSubmission_2022-02-28_02:41:37.565.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterOM Genetics
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-04-30 09:09:13ID requested
12022-02-28 02:41:38announced
22023-11-14 08:49:58announced2023-11-14: Updated project metadata.
Publication List
Ali M, Kabir F, Raskar S, Renuse S, Na CH, Delannoy M, Khan SY, Riazuddin SA, Generation and proteome profiling of PBMC-originated, iPSC-derived lentoid bodies. Stem Cell Res, 46():101813(2020) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: PBMC, iPSC-derived Lentoid Bodies, Proteome, Mass-spectrometry
Contact List
S. Amer Riazuddin
contact affiliationThe Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA
contact emailriazuddin@jhmi.edu
lab head
OM Genetics
contact affiliationJohns Hopkins Wilmer Eye Institute
contact emailomgenetics@jhmi.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
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