PXD009602-1

PXD009602 is an original dataset announced via ProteomeXchange.

Title	Mapping the HLA ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation
Description	Immunopeptidome analysis of colorectal adenocarcinoma tissues as well as adjacent benign tissues was performed to characterize the natural HLA class I and class II presented ligandome represented in the context of malignancy as well as in benign tissue of the colon.
HostingRepository	PRIDE
AnnounceDate	2018-05-31
AnnouncementXML	Submission_2018-05-30_17:45:57.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Ghosh
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-04-25 08:27:02	ID requested
⏵ 1	2018-05-30 17:45:59	announced

L, ö, ffler MW, Kowalewski DJ, Backert L, Bernhardt J, Adam P, Schuster H, Dengler F, Backes D, Kopp HG, Beckert S, Wagner S, K, ö, nigsrainer I, Kohlbacher O, Kanz L, K, ö, nigsrainer A, Rammensee HG, Stevanovi, ć S, Haen SP, Mapping the HLA Ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation. Cancer Res, 78(16):4627-4641(2018) [pubmed]

curator keyword: Biomedical

submitter keyword: Colorectal adenocarcinoma, neoplasia, cancer, colon cancer, HLA, HLA-ligand, HLA-ligandomics, colon, peptide, HLA-restricted peptide

Hans-Georg Rammensee
contact affiliation	University of Tübingen Interfaculty Institute for Cell Biology Department of Immunology Auf der Morgenstelle 15 72076 Tuebingen Germany
contact email	rammensee@uni-tuebingen.de
lab head
Michael Ghosh
contact affiliation	Department of Immunology, Tübingen
contact email	Michaelghosh@gmx.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/05/PXD009602

PRIDE project URI

• PRIDE
  1. PXD009602
     1. Label: PRIDE project
     2. Name: Mapping the HLA ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation