PXD009420 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae |
Description | We propose a carbon source dependent genetic regulatory network for the budding yeast Saccharomyces cerevisiae, derived from quantitative proteomic analyses integrated with bioinformatics knowledge of regulatory pathways and protein interactions. The proposed network, comprising 1247 transcription factor interactions and 126 chaperone interactions, defines the proteome shift in the cell when growing under different carbon sources. We used a label-free proteomics strategy to quantify alterations in protein abundance for S. cerevisiae when grown on minimal media using glucose, galactose, maltose and trehalose as sole carbon sources. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:20:12.946.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manuel Garcia-Albornoz |
SpeciesList | scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | acetylated residue; monohydroxylated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-04-06 01:47:45 | ID requested | |
1 | 2021-03-22 10:48:31 | announced | |
⏵ 2 | 2024-10-22 05:20:13 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: proteomics, shotgun proteomics, regulatory network, yeast,S. cerevisiae |
Contact List
Simon Hubbard |
contact affiliation | Professor of Computational Biology Division Head, Evolution and Genomic Sciences School of Biological Sciences | Faculty of Biology, Medicine and Health The University of Manchester, Michael Smith Building, Manchester M13 9PT |
contact email | simon.hubbard@manchester.ac.uk |
lab head | |
Manuel Garcia-Albornoz |
contact affiliation | University of Manchester |
contact email | manuel.garciaalbornoz@manchester.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD009420 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009420
- Label: PRIDE project
- Name: A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae