PXD009256-2

PXD009256 is an original dataset announced via ProteomeXchange.

Title	Total Proteome Analysis in RNAi treated C. elegans (mrps5, fzo1, drp1, eat3)
Description	A SWATH-based worflow has been developed for C. elegans proteome profiling, including sample preparation, SWATH spectral library generation and downstream data treatment. The influences of several RNAi treatments (including mrps5, fzo1, drp1, eat3) on C. elegans total proteome were studied.
HostingRepository	PRIDE
AnnounceDate	2020-04-03
AnnouncementXML	Submission_2020-06-12_04:16:19.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Evan Williams
SpeciesList	scientific name: Caenorhabditis elegans; NCBI TaxID: 6239;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2018-03-19 07:56:29	ID requested
1	2020-04-02 23:29:46	announced
⏵ 2	2020-06-12 04:16:20	announced	2020-06-12: Updated publication reference for PubMed record(s): 32259199.
3	2024-10-22 05:01:50	announced	2024-10-22: Updated project metadata.

Liu YJ, McIntyre RL, Janssens GE, Williams EG, Lan J, van Weeghel M, Schomakers B, van der Veen H, van der Wel NN, Yao P, Mair WB, Aebersold R, MacInnes AW, Houtkooper RH, Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30. J Cell Biol, 219(6):(2020) [pubmed]

curator keyword: Biological

submitter keyword: Caenorhabditis elegans, SWATH, mrps-5, fzo1, drp1, eat3, RNAi

Ruedi Aebersold
contact affiliation	Institute of Molecular Systems Biology, ETH Zurich
contact email	aebersold@imsb.biol.ethz.ch
lab head
Evan Williams
contact affiliation	ETH Zurich
contact email	evangw@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/04/PXD009256

PRIDE project URI

• PRIDE
  1. PXD009256
     1. Label: PRIDE project
     2. Name: Total Proteome Analysis in RNAi treated C. elegans (mrps5, fzo1, drp1, eat3)