PXD009230-2
PXD009230 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Arabidopsis circadian proteomics and phosphoproteomics in Col0 and CCA1-Ox |
| Description | Proteomics and phosphoproteomics analyses of circadian time course samples of Arabidopsis thaliana rosettes (22 DAS) in constant light. Two independent experiments, with global proteomics and phosphoproteomics analyses for each. Experiment I has a time point every 4h from ZT12 to ZT32, experiment 2 has a time point every 4h from ZT24 to ZT52. In each experiment, two genotypes were used - WT Col0 and the transcriptionally arrhythmic CCA1-Ox line. |
| HostingRepository | MassIVE |
| AnnounceDate | 2023-01-09 |
| AnnouncementXML | Submission_2023-01-09_09:36:57.984.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Johanna Krahmer |
| SpeciesList | scientific name: Arabidopsis thaliana; common name: thale cress; NCBI TaxID: 3702; |
| ModificationList | Carbamidomethyl; Oxidation; Phospho; Acetyl |
| Instrument | LTQ Orbitrap XL |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2018-03-16 07:02:48 | ID requested | |
| 1 | 2020-08-07 08:54:16 | announced | |
| ⏵ 2 | 2023-01-09 09:36:59 | announced | 2022-01-09: Adding publication [PMID34740825] to dataset [MSV000082175] |
Publication List
| Krahmer J, Hindle M, Perby LK, Mogensen HK, Nielsen TH, Halliday KJ, van Ooijen G, Le Bihan T, Millar AJ, The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana. Mol Cell Proteomics, 21(1):100172(2022) [pubmed] |
Keyword List
| submitter keyword: circadian, time course, non-transcriptional oscillator |
Contact List
| Prof Andrew Millar | |
|---|---|
| contact affiliation | University of Edinburgh |
| contact email | Andrew.Millar@ed.ac.uk |
| lab head | |
| Johanna Krahmer | |
| contact affiliation | University of Lausanne |
| contact email | johanna.krahmer@unil.ch |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082175/ |
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