PXD009048 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Bloodstream infection N-glycoproteomics |
Description | Here we have performed targeted quantitative N-glycoproteomics from plasma samples of patients with confirmed positive blood culture together with age and sex matched febrile controls with negative blood culture reports. Three hundred and sixty eight potential N-glycopeptides were quantified by mass spectrometry and 149 were further selected for identification. Twenty four N-glycopeptides were identified with high confidence together with elucidation of the peptide sequence, N-glycosylation site, glycan composition and proposed glycan structures. these N-glycopeptides can be used as potential biomarkers of bloodstream infection. |
HostingRepository | PRIDE |
AnnounceDate | 2018-04-09 |
AnnouncementXML | Submission_2018-04-09_01:06:55.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sakari Joenväärä |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Synapt MS |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-02-27 02:09:58 | ID requested | |
⏵ 1 | 2018-04-09 01:06:56 | announced | |
Publication List
Joenvaara S, Saraswat M, Kuusela P, Saraswat S, Agarwal R, Kaartinen J, J, ä, rvinen A, Renkonen R, Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients. PLoS One, 13(3):e0195006(2018) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Bloodstream infection, Sepsis, N-Glycoproteomics, Human plasma |
Contact List
Risto Renkonen |
contact affiliation | Transplantation laboratory, Haartmaninkatu 3, PO Box 21, FI-00014 University of Helsinki, Finland. And HUSLAB, Helsinki University Hospital, Finland. |
contact email | risto.renkonen@helsinki.fi |
lab head | |
Sakari Joenväärä |
contact affiliation | Helsinki University |
contact email | sakari.joenvaara@helsinki.fi |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD009048
- Label: PRIDE project
- Name: Bloodstream infection N-glycoproteomics