PXD008924 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Time series and steady state proteomics of Pseudomonas aeruginosa phenazine mutants |
Description | Microbes in biofilms face the challenge of substrate limitation. In particular, cells in Pseudomonas aeruginosa biofilms growing in the laboratory or during host colonization often become limited for oxygen. Previously we found that phenazines, antibiotics produced by P. aeruginosa, balance the intracellular redox state for cells in biofilms. Here, we show that genes involved in denitrification are induced in phenazine-null (Δphz) mutant biofilms grown under an aerobic atmosphere, even in the absence of nitrate. This finding suggests that resident cells employ a bet-hedging strategy to anticipate the potential availability of nitrate and counterbalance their highly reduced redox state. Consistent with our previous characterization of aerobically-grown colonies supplemented with nitrate, we find that the pathway that is induced in Δphz colonies combines the nitrate reductase activity of the periplasmic enzyme Nap with downstream reduction of nitrite to nitrogen gas catalyzed by the enzymes Nir, Nor, and Nos. This regulatory relationship differs from the denitrification pathway that functions under anaerobic growth with nitrate as the terminal electron acceptor, which depends on the membrane-associated nitrate reductase Nar. We identify sequences in the promoter regions of the nap and nir operons that are required for the effects of phenazines on expression. We also show that specific phenazines have differential effects on nap gene expression. Finally, we provide evidence that individual steps of the denitrification pathway are catalyzed at different depths within aerobically grown biofilms, suggesting metabolic cross-feeding between community subpopulations. (corresponding publication) |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-19 |
AnnouncementXML | Submission_2018-10-19_12:58:54.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Christine Vogel |
SpeciesList | scientific name: Pseudomonas aeruginosa PA14-RN6; NCBI TaxID: 910263; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-02-12 01:21:22 | ID requested | |
⏵ 1 | 2018-10-19 12:58:55 | announced | |
Publication List
Lin YC, Sekedat MD, Cornell WC, Silva GM, Okegbe C, Price-Whelan A, Vogel C, Dietrich LEP, Phenazines Regulate Nap-Dependent Denitrification in Pseudomonas aeruginosa Biofilms. J Bacteriol, 200(9):(2018) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: biofilm |
phenazines |
denitrification |
Pseudomonas aeruginosa |
Contact List
Christine Vogel |
contact affiliation | New York University |
contact email | cvogel@nyu.edu |
lab head | |
Christine Vogel |
contact affiliation | New York University |
contact email | cvogel@nyu.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008924
- Label: PRIDE project
- Name: Time series and steady state proteomics of Pseudomonas aeruginosa phenazine mutants