PXD008841-3

PXD008841 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Breast cancer proteome landscape
Description	Proteome characterization of 45 breast tumors using HiRIEF nanoLC-MS/MS.
HostingRepository	jPOST
AnnounceDate	2019-02-04
AnnouncementXML	Submission_2021-02-04_17:06:42.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Henrik Johansson
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; TMT6plex reporter+balance reagent N-acylated residue; TMT6plex reporter+balance reagent acylated N-terminal
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-02-02 02:12:10	ID requested
1	2019-02-03 07:00:10	announced
2	2020-08-11 04:15:05	announced	2020-08-11: Updated PubMed.
⏵ 3	2021-02-04 17:06:43	announced	2021-02-04: Updated FTP location.
4	2022-09-18 02:51:54	announced	2022-09-18: Updated FTP location.

Publication List

Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, H, ö, glander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B, Luders T, Borgen E, Kristensen VN, Russnes HG, Lingj, æ, rde OC, Mills GB, Sahlberg KK, B, ø, rresen-Dale AL, Lehti, ö J, Geisler J, Hofvind S, Engebr, å, ten O, Geitvik GA, Langer, ø, d A, K, å, resen R, M, æ, landsmo GM, S, ø, rlie T, Skjerven HK, Park D, Hartman-Johnsen OJ, Breast cancer quantitative proteome and proteogenomic landscape. Nat Commun, 10(1):1600(2019) [pubmed]

Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, H, ö, glander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B, Luders T, Borgen E, Kristensen VN, Russnes HG, Lingj, æ, rde OC, Mills GB, Sahlberg KK, B, ø, rresen-Dale AL, Lehti, ö J, Geisler J, Hofvind S, Engebr, å, ten O, Geitvik GA, Langer, ø, d A, K, å, resen R, M, æ, landsmo GM, S, ø, rlie T, Skjerven HK, Park D, Hartman-Johnsen OJ, Breast cancer quantitative proteome and proteogenomic landscape. Nat Commun, 10(1):1600(2019) [pubmed]

Keyword List

submitter keyword: breast tumors, PAM50, proteome, TMT

submitter keyword: breast tumors, PAM50, proteome, TMT

Contact List

Janne Lehtiö
lab head
Henrik Johansson
contact affiliation	Karolinska Institutet
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000265

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000265