PXD008499-2

PXD008499 is an original dataset announced via ProteomeXchange.

Title	Proteomics characterization of the non-model microorganism: Nannochloropsis gaditana.
Description	Nannochloropsis gaditana is a microalgae of the phylum eustigmatophyceae that has been reported from fresh and brackish waters. This species has been widely cultured, mainly directed to biofuel production, due to its capacity to produce and accumulates high amounts of lipids under different culturing conditions. Furthermore, nowadays N. gaditana is being used as fish and mollusc food in aquaculture facilities. Besides, microalgae are recognized protein producers, thus, are posited as an alternative protein source that could be very valuable in areas such as agri-food or biomedicine. In this sense, seas and oceans had showed their great potential for innovation, being the main focus of the initiative Blue Growth from EU. Thereby, marine biotechnology will provide of new pharmaceuticals or industrial products from marine biomass. In order to study the whole proteome of Nannochloropsis gaditana, a proteomic approach was initiated using fresh and atomized microalgae samples, as the main commercial forms. Around 7500 peptides were detected, getting 1950 protein identification hits. Qualitative and quantitative differences were analysed. The identified proteins were categorized according to gene ontology classification. In this study, it has been developed and described the first proteomic analysis of the microalgae Nannochloropsis gaditana, containing an important number of identified proteins that may have a relevant role in different agri-food and biomedical processes.
HostingRepository	PRIDE
AnnounceDate	2020-12-21
AnnouncementXML	Submission_2020-12-21_03:43:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Francisco Fernández-Acero
SpeciesList	scientific name: Nannochloropsis gaditana; NCBI TaxID: 72520;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2017-12-19 05:09:59	ID requested
1	2018-11-07 00:51:03	announced
⏵ 2	2020-12-21 03:43:53	announced	2020-12-21: Updated publication reference for PubMed record(s): 30385413. 2020-12-21: Updated publication reference for DOI(s): 10.37247/PAMB.1.2020.45.
3	2023-11-14 09:01:18	announced	2023-11-14: Updated project metadata.

10.37247/PAMB.1.2020.45;

Fern, á, ndez-Acero FJ, Amil-Ruiz F, Dur, á, n-Pe, ñ, a MJ, Carrasco R, Fajardo C, Guarnizo P, Fuentes-Almagro C, Vallejo RA, Valorisation of the microalgae Nannochloropsis gaditana biomass by proteomic approach in the context of circular economy. J Proteomics, 193():239-242(2019) [pubmed]

curator keyword: Biological

submitter keyword: Nannochloropsis gaditana, Microalgae, proteomics, non-model organism

Francisco Javier Fernández Acero
contact affiliation	Titular Professor Laboratory of Microbiology Andalusian Institute for Grape and Grapevine Research (CAIV) Marine and Environmental Sciences Faculty (CASEM) University of Cadiz
contact email	franciscojavier.fernandez@uca.es
lab head
Francisco Fernández-Acero
contact affiliation	University of Cadiz
contact email	franciscojavier.fernandez@uca.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD008499

PRIDE project URI

• PRIDE
  1. PXD008499
     1. Label: PRIDE project
     2. Name: Proteomics characterization of the non-model microorganism: Nannochloropsis gaditana.