PXD008463 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Evaluation of scoring functions and peptide exposure by fractionation |
Description | Evaluation of sensitivity and accuracy of widely used scoring functions Sequest, MaxQuant, Peaks, and Byonic. Spectra from E. coli were matched to human sequences, and human spectra from K052 cells were matched to A. loki sequences to determine specificity of matching and FDR estimation. A subsampling analysis of SCX-RP fractionation was performed. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-18 |
AnnouncementXML | Submission_2018-10-18_11:14:48.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Alex Kentsis |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | Orbitrap Fusion ETD |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-12-15 01:21:43 | ID requested | |
⏵ 1 | 2018-10-18 11:14:49 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Technical |
submitter keyword: algorithm benchmark proteogenomics Peaks Sequest Byonic MaxQuant |
Contact List
Alex Kentsis |
contact affiliation | Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY |
contact email | kentsisresearchgroup@gmail.com |
lab head | |
Alex Kentsis |
contact affiliation | Memorial Sloan Kettering Cancer Center |
contact email | kentsisresearchgroup@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD008463
- Label: PRIDE project
- Name: Evaluation of scoring functions and peptide exposure by fractionation