PXD008453-2

PXD008453 is an original dataset announced via ProteomeXchange.

Title	Proteins used by the predatory yeast Saccharomycopsis schoenii as it attacks and kills the prey cell Saccharomyces cerevisiae
Description	Saccahromycopsis schoenii belongs to a genus of yeasts that have the ability to attack and kill other yeast and fungi. De novo genomic sequencing and genome assembly suggests that S. schoenii might belong to the CTG clade. To examine whether it translated CTG codons to leucine (standard codon usage) or serine (alternative codon usage), we analysed its proteome during growth on full media. To see if translation is changed during nutritional stress or during predation on a prey cell (Saccharomyces cerevisiae), we analysed and quantified its proteome during these conditions compared to its proteomic expression in full media.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:42:10.912.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Klara Junker
SpeciesList	scientific name: Saccharomycopsis schoenii; NCBI TaxID: 44080; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-12-14 03:29:49	ID requested
1	2019-03-18 09:41:16	announced
⏵ 2	2024-10-22 04:42:11	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: LC-MSMS, shotgun proteomics, starvation, Saccharomyces cerevisiae, Illumina, Saccharomycopsis, necrotrophy, CTG clade, pathogen,yeast, translation, predation

Jürgen Wendland
contact affiliation	Research Group of Microbiology (MICR), Vrije Universiteit Brussel (VUB), Brussels, Belgium
contact email	jurgen.wendland@vub.be
lab head
Klara Junker
contact affiliation	Carlsberg Research Laboratory
contact email	klara.ak.junker@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD008453

PRIDE project URI

• PRIDE
  1. PXD008453
     1. Label: PRIDE project
     2. Name: Proteins used by the predatory yeast Saccharomycopsis schoenii as it attacks and kills the prey cell Saccharomyces cerevisiae