PXD007819-1

PXD007819 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Pediatric IBD MLI metaproteomics
Description	Mucosal-luminal interface (MLI) samples were collected from a cohort of children with new-onset IBD and microbial cells were harvested and processed for metaproteomic analysis. Deep metaproteomics data analysis was then performed for better understanding the MLI microbiota functions in the development of pediatric IBD.
HostingRepository	PRIDE
AnnounceDate	2018-08-03
AnnouncementXML	Submission_2018-08-03_10:21:20.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xu Zhang
SpeciesList	scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-22 06:23:18	ID requested
⏵ 1	2018-08-03 10:21:22	announced

Publication List

Zhang X, Deeke SA, Ning Z, Starr AE, Butcher J, Li J, Mayne J, Cheng K, Liao B, Li L, Singleton R, Mack D, Stintzi A, Figeys D, Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease. Nat Commun, 9(1):2873(2018) [pubmed]

Zhang X, Deeke SA, Ning Z, Starr AE, Butcher J, Li J, Mayne J, Cheng K, Liao B, Li L, Singleton R, Mack D, Stintzi A, Figeys D, Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease. Nat Commun, 9(1):2873(2018) [pubmed]

Keyword List

curator keyword: Metaproteomics
submitter keyword: Children, LC-MSMS, intestine, microbiome, IBD

curator keyword: Metaproteomics

submitter keyword: Children, LC-MSMS, intestine, microbiome, IBD

Contact List

Daniel Figeys
contact affiliation	BMI, Faculty of Medicine, University of Ottawa, Canada
contact email	dfigeys@uottawa.ca
lab head
Xu Zhang
contact affiliation	University of Ottawa
contact email	cheuzhang@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/08/PXD007819
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/08/PXD007819

PRIDE project URI

Repository Record List

[ + ]