PXD007662-3

PXD007662 is an original dataset announced via ProteomeXchange.

Title	Proteogenomics of malignant melanoma cell lines: searching for genetically encoded point mutations in LC-MS/MS data
Description	In this study we performed proteogenomic analysis for 9 cell lines of malignant melanoma. The main objectives of the study were identifying the variants originating from point mutations and analyzing the effect of exome data filtering on the outcome of variant identification.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:48:04.913.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Irina Ilina
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-09-05 07:28:58	ID requested
1	2018-12-05 08:33:33	announced
2	2019-02-11 02:48:01	announced	Updated publication reference for PubMed record(s): 29619825.
⏵ 3	2024-10-22 04:48:05	announced	2024-10-22: Updated project metadata.

10.1021/acs.jproteome.7b00841;

Lobas AA, Pyatnitskiy MA, Chernobrovkin AL, Ilina IY, Karpov DS, Solovyeva EM, Kuznetsova KG, Ivanov MV, Lyssuk EY, Kliuchnikova AA, Voronko OE, Larin SS, Zubarev RA, Gorshkov MV, Moshkovskii SA, Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics. J Proteome Res, 17(5):1801-1811(2018) [pubmed]

curator keyword: Biomedical

submitter keyword: LS-MS/MS,Melanoma

Sergei A. Moshkovskii
contact affiliation	Head of Laboratory of Medical Proteomics Department of Personalized Medicine Institute of Biomedical Chemistry Russia
contact email	smosh@mail.ru
lab head
Irina Ilina
contact affiliation	IBMC
contact email	irinailina.ibmc@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/12/PXD007662

PRIDE project URI

• PRIDE
  1. PXD007662
     1. Label: PRIDE project
     2. Name: Proteogenomics of malignant melanoma cell lines: searching for genetically encoded point mutations in LC-MS/MS data