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PXD007646-1

PXD007646 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSerial-Omics of Equine Urine
DescriptionHorse urine is easily collected and contains molecules readily measurable using mass spectrometry that can be used as biomarkers representative of health, disease or drug tampering. This study aimed at analyzing microliter levels of horse urine to purify, identify and quantify proteins, polar metabolites and non-polar lipids. Urine from a healthy 12 year old quarter horse mare on a diet of grass hay and vitamin/mineral supplements with limited pasture access was collected for serial-omics characterization. The urine was treated with methyl tert-butyl ether (MTBE) and methanol to partition into three distinct layers for protein, non-polar lipid and polar metabolite content from a single liquid-liquid extraction and was repeated two times. Each layer was analyzed by high performance liquid chromatography – high resolution tandem mass spectrometry (LC-MS/MS) to obtain protein sequence and relative protein levels as well as identify and quantify small polar metabolites and lipids. The results show 46 urine proteins, many related to normal kidney function, structural and circulatory proteins as well as 474 small polar metabolites but only 10 lipid molecules. Metabolites were mostly related to urea cycle and ammonia recycling as well as amino acid related pathways, plant diet specific molecules, etc. The few lipids represented triglycerides and phospholipids. These data show a complete mass spectrometry based –omics characterization of equine urine from a single 333 uL mid-stream urine aliquot. The data can be used as a baseline for healthy urine composition and analyses can be used to monitor disease progression, health status, monitor drug use, etc.
HostingRepositoryPRIDE
AnnounceDate2018-07-23
AnnouncementXMLSubmission_2018-07-23_08:25:27.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJohn Asara
SpeciesList scientific name: Equus caballus (Horse); NCBI TaxID: 9796;
ModificationListNo PTMs are included in the dataset
InstrumentQ TRAP; Q Exactive; LTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-09-04 05:59:45ID requested
12018-07-23 08:25:28announced
22024-10-22 04:40:12announced2024-10-22: Updated project metadata.
Publication List
Yuan M, Breitkopf SB, Asara JM, Serial-omics characterization of equine urine. PLoS One, 12(10):e0186258(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Horse, Urine, Equine, Metabolomics, Proteomics, Lipidomics, Integration, Biomarkers
Contact List
John M Asara
contact affiliationAssociate Professor of Medicine Harvard Medical School Director, Mass Spectrometry Core Beth Israel Deaconess Medical Center 3 Blackfan Circle CLS 447 office CLS 425 lab Boston, MA 02115 Tel: 617-735-2651
contact emailjasara@bidmc.harvard.edu
lab head
John Asara
contact affiliationSignal Transduction
contact emailjasara@bidmc.harvard.edu
dataset submitter
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Dataset FTP location
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PRIDE project URI
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