PXD007517-1

PXD007517 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Xylem sap shotgun proteomics from Fe- and Mn-deficient and Mn-toxic tomato plants
Description	The aim of this work was to study the effects of Fe and Mn deficiencies and Mn toxicity on the protein profile of the xylem sap of tomato (Solanum lycopersicum), with the aim of elucidating plant response mechanisms to these nutritional stresses. Tomato was chosen as a model plant because the tomato genome has been published and this plant species has adequate root pressure and turgid stems that permit xylem sap sampling in sufficient amounts by de-topping. The high-throughput shotgun analysis has permitted to identify and quantitate a large number of low abundance proteins in the tomato xylem sap.
HostingRepository	PRIDE
AnnounceDate	2017-11-30
AnnouncementXML	Submission_2017-11-29_19:21:10.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Laura Ceballos-Laita
SpeciesList	scientific name: Viridiplantae; NCBI TaxID: 33090;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap XL

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-08-18 04:11:42	ID requested
⏵ 1	2017-11-29 19:21:12	announced
2	2024-10-22 03:59:32	announced	2024-10-22: Updated project metadata.

Publication List

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D, Abad, í, a A, Uemura M, Abad, í, a J, L, ó, pez-Mill, á, n AF, Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses. J Proteomics, 170():117-129(2018) [pubmed]

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D, Abad, í, a A, Uemura M, Abad, í, a J, L, ó, pez-Mill, á, n AF, Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses. J Proteomics, 170():117-129(2018) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Iron deficiency
Mn deficiency
Mn toxicity
Shotgun proteomics
Tomato
Xylem sap

curator keyword: Biological

submitter keyword: Iron deficiency

Mn deficiency

Mn toxicity

Shotgun proteomics

Tomato

Xylem sap

Contact List

Laura Ceballos-Laita
contact affiliation	Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. 13034, 50080 Zaragoza, Spain
contact email	lceballos@eead.csic.es
lab head
Laura Ceballos-Laita
contact affiliation	Experimental Station Aula Dei-CSIC
contact email	lceballos@eead.csic.es
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007517
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD007517

PRIDE project URI

Repository Record List

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