PXD007077 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Soil metaproteomics using DNA RNA protein co-extraction method |
Description | Soil is an inherently complex matrix and as such, we believe when performing culture-independent microbial community analyses using the 'omics' suite of tools, all biomolecules investigated should be co-extracted from the same biological sample. To this end, we developed a robust, cost-effective DNA, RNA and protein co-extraction method for soil. The samples deposited here represent 3 biological replicates from one of eight soil types tested in this work. |
HostingRepository | PRIDE |
AnnounceDate | 2019-07-15 |
AnnouncementXML | Submission_2019-07-15_08:54:08.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Camilla Thorn |
SpeciesList | scientific name: environmental samples; NCBI TaxID: 318178; |
ModificationList | No PTMs are included in the dataset |
Instrument | QSTAR |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-07-19 01:45:17 | ID requested | |
⏵ 1 | 2019-07-15 08:54:09 | announced | |
Publication List
Thorn CE, Bergesch C, Joyce A, Sambrano G, McDonnell K, Brennan F, Heyer R, Benndorf D, Abram F, A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes and pure cultures. Mol Ecol Resour, 19(2):439-455(2019) [pubmed] |
Keyword List
submitter keyword: soil metaproteomics LC MS/MS |
Contact List
Florence Abram |
contact affiliation | Functional Environmental Microbiology, College of Science, NUI Galway, Ireland |
contact email | florence.abram@nuigalway.ie |
lab head | |
Camilla Thorn |
contact affiliation | National University of Ireland Galway |
contact email | camilla.james1@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD007077 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD007077
- Label: PRIDE project
- Name: Soil metaproteomics using DNA RNA protein co-extraction method