PXD007039 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Picky - a simple online method designer for targeted proteomics |
Description | Picky is an online method designer for targeted proteomics. To assess the performance of PRM methods designed by Picky we carried out a benchmark experiment. As reference samples we used different amounts of human proteins spiked into 1.4 µg yeast lysate. These sample where analyzed in PRM and DDA mode. All methods inlcuded a shotgun method (top10 for DDA and top3 for PRM) and can therefore all be analyzed by MaxQuant. |
HostingRepository | PRIDE |
AnnounceDate | 2017-08-04 |
AnnouncementXML | Submission_2018-03-02_00:16:12.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Henrik Zauber |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-07-13 13:19:23 | ID requested | |
1 | 2017-08-04 03:15:18 | announced | |
⏵ 2 | 2018-03-02 00:16:14 | announced | Updated publication reference for PubMed record(s): 29489744. |
Publication List
Zauber H, Kirchner M, Selbach M, Picky: a simple online PRM and SRM method designer for targeted proteomics. Nat Methods, 15(3):156-157(2018) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: Benchmark, DDA, PRM |
Contact List
Matthias Selbach |
contact affiliation | Max-Delbrück-Centrum für Molekulare Medizin in der Helmholtz-Gemeinschaft Robert-Rössle-Straße 10 13125 Berlin |
contact email | matthias.selbach@mdc-berlin.de |
lab head | |
Henrik Zauber |
contact affiliation | MDC Berlin-Buch |
contact email | henrik.zauber@mdc-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/08/PXD007039 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD007039
- Label: PRIDE project
- Name: Picky - a simple online method designer for targeted proteomics