<<< Full experiment listing


PXD006832 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePROCAL: A set of 40 peptide standards for retention time indexing, column performance monitoring and collision energy calibration
DescriptionWe describe PROCAL (ProteomeTools Standard), a set of 40 synthetic peptides that span the entire hydrophobicity range of tryptic digests, enabling not only accurate determination of retention time indices but also monitoring of chromatographic separation performance over time. The fragmentation characteristics of the peptides can also be used to calibrate and compare collision energies between mass spectrometers. The sequences of all selected peptides do not occur in any natural protein, thus eliminating the need for stable isotope labeling and allowing straightforward integration into standard peptide identification strategies employing database searching or spectral library matching.
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterDaniel Zolg
SpeciesList scientific name: artificial sequences; NCBI TaxID: 81077;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-06-29 07:40:12ID requested
12017-09-07 08:08:44announced
22017-11-16 07:06:00announcedUpdated project metadata.
Publication List
Zolg DP, Wilhelm M, Yu P, Knaute T, Zerweck J, Wenschuh H, Reimer U, Schnatbaum K, Kuster B, PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration. Proteomics, 17(21):(2017) [pubmed]
Keyword List
ProteomeXchange project tag: ProteomeTools
curator keyword: Technical
submitter keyword: synthetic peptide, retention time calibration, ProteomeTools, retention time kit, peptide standard
Contact List
Bernhard Kuster
contact affiliationChair of Proteomics and Bioanalytics, Technical University of Munich
contact emailkuster@tum.de
lab head
Daniel Zolg
contact affiliationTechnical University of Munich
contact emaildaniel.zolg@tum.de
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/09/PXD006832
PRIDE project URI
Repository Record List
[ + ]