PXD006697-2

PXD006697 is an original dataset announced via ProteomeXchange.

Title	Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data
Description	A quantitative time series of EGFR signaling was acquired using mass spectrometry-based phosphoproteomics to develop an algorithm that identifies signaling pathway structures. The study used Flp-In 293 cells expressing EGFR that were stimulated with EGF.
HostingRepository	PRIDE
AnnounceDate	2018-09-18
AnnouncementXML	Submission_2018-10-04_08:57:46.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Anthony Gitter
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2017-06-12 01:20:45	ID requested
1	2018-09-18 07:19:05	announced
⏵ 2	2018-10-04 08:57:48	announced	Updated publication reference for PubMed record(s): 30257219.
3	2024-10-22 04:38:40	announced	2024-10-22: Updated project metadata.

K, ö, ksal AS, Beck K, Cronin DR, McKenna A, Camp ND, Srivastava S, MacGilvray ME, Bod, í, k R, Wolf-Yadlin A, Fraenkel E, Fisher J, Gitter A, Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. Cell Rep, 24(13):3607-3618(2018) [pubmed]

curator keyword: Biological

submitter keyword: HEK-293, phosphorylation, time series, EGFR, Temporal Pathway Synthesizer

Anthony Gitter
contact affiliation	University of Wisconsin-Madison, Madison, WI, United States
contact email	gitter@biostat.wisc.edu
lab head
Anthony Gitter
contact affiliation	University of Wisconsin-Madison
contact email	gitter@biostat.wisc.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD006697

PRIDE project URI

• PRIDE
  1. PXD006697
     1. Label: PRIDE project
     2. Name: Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data