PXD006691 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Stability of peptide fragmentation patterns |
Description | Our study aims to determine the stability of fragmetnation patterns of peptides upon collision-induced dissociation (CID). Recent studies reported that for a minority of peptides, CID fragmentation leads to non-reproducible fragmentation spectra and therefore impaired identification. In order to study the fragmentation behavior, we first identified peptides that exhibit different fragmentation patterns. In order to reveal the cause, we selected a subset of the peptides and studied the dependency of abundance of distinct fragmentation patterns with collision energy settings and with of the isolation window. |
HostingRepository | PRIDE |
AnnounceDate | 2019-02-25 |
AnnouncementXML | Submission_2019-02-25_02:10:58.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Andreas Schmidt |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | TripleTOF 5600+ |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-06-09 07:55:23 | ID requested | |
⏵ 1 | 2019-02-25 02:10:59 | announced | |
Publication List
Ammar C, Berchtold E, Csaba G, Schmidt A, Imhof A, Zimmer R, Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets. J Proteome Res, 18(4):1553-1566(2019) [pubmed] |
Keyword List
submitter keyword: peptide fragmentation, collision-induced dissociation, tandem MS, peptide identification |
Contact List
Axel Imhof |
contact affiliation | Protein Analysis Unit (ZfP) BioMedical Center, LMU Munich Grosshaderner Strasse 9 82152 Planegg-Martinsried Tel. +49 89 2180 75420 |
contact email | imhof@lmu.de |
lab head | |
Andreas Schmidt |
contact affiliation | Adolf-Butenandt-Institut |
contact email | A.Schmidt@med.uni-muenchen.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/02/PXD006691 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006691
- Label: PRIDE project
- Name: Stability of peptide fragmentation patterns