PXD006575 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Specific labeling of stem cell activity in human colorectal organoids using an ASCL2-responsive minigene |
Description | Organoid technology provides the possibility to culture human colon
tissue and patient-derived colorectal cancers (CRC) while maintaining
all functional and phenotypic characteristics. Labeling of human colon
stem cells (CoSCs), especially in normal and benign tumor organoids, is
challenging and therefore limits usability of multi-patient organoid
libraries for CoSC research. Here, we developed STAR (STem cell Ascl2
Reporter), a minimal enhancer/promoter element that reports
transcriptional activity of ASCL2, a master regulator of LGR5+ CoSC
fate. Among others via lentiviral infection, STAR minigene labels stem
cells in normal as well as in multiple engineered and patient-derived
CRC organoids of different stage and genetic make-up. STAR revealed that
stem cell driven differentiation hierarchies and the capacity of cell
fate plasticity (de-differentiation) are present at all stages of human
CRC development. The flexible and user-friendly nature of STAR
applications in combination with organoid technology will facilitate
basic research on human adult stem cell biology. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:38:03.072.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Rik Lindeboom |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | dimethylated residue; iodoacetamide derivatized amino-terminal residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-05-23 06:17:23 | ID requested | |
1 | 2018-01-29 08:03:14 | announced | |
2 | 2019-02-12 08:24:55 | announced | Updated publication reference for PubMed record(s): 29425513. |
⏵ 3 | 2024-10-22 04:38:07 | announced | 2024-10-22: Updated project metadata. |
Publication List
Oost KC, van Voorthuijsen L, Fumagalli A, Lindeboom RGH, Sprangers J, Omerzu M, Rodriguez-Colman MJ, Heinz MC, Verlaan-Klink I, Maurice MM, Burgering BMT, van Rheenen J, Vermeulen M, Snippert HJG, Specific Labeling of Stem Cell Activity in Human Colorectal Organoids Using an ASCL2-Responsive Minigene. Cell Rep, 22(6):1600-1614(2018) [pubmed] |
10.1016/j.celrep.2018.01.033; |
Keyword List
curator keyword: Biological, Biomedical |
submitter keyword: intestine, ASCL2,Organoids, stem cells, LGR5, colorectal cancer |
Contact List
Hugo Snippert |
contact affiliation | Molecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht, The Netherlands |
contact email | H.J.G.Snippert@umcutrecht.nl |
lab head | |
Rik Lindeboom |
contact affiliation | Radboud Institute for Molecular Life Sciences |
contact email | r.lindeboom@science.ru.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD006575 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006575
- Label: PRIDE project
- Name: Specific labeling of stem cell activity in human colorectal organoids using an ASCL2-responsive minigene