PXD006526 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative Proteomic Atlas Uncovering the widespread Ubiquitylation regulation in the Embryo of Germinating Rice Seed |
Description | Using high affinity K-Ɛ-GG antibody integrating highly sensitive MS, we investigated the quantitative atlas of ubiquitylome as well as the proteome in the embryos of germinated rice seed. A total of 7507 proteins were identified, and 5018 were precisely quantified, the mass errors and peptides length distribution showed the high mass accuracy, andthe PCA result displayed the well repeatability (Figure S3, Table S2). Of these quantified proteins, 764(65.3%) were found in the ubiquitylome, this high overlapping ascribed to the high resolution of MS. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-23 |
AnnouncementXML | Submission_2022-02-23_09:06:13.982.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Dongli He |
SpeciesList | scientific name: Rice(O. sativa); NCBI TaxID: 4530; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-05-16 03:28:16 | ID requested | |
⏵ 1 | 2022-02-23 09:06:14 | announced | |
2 | 2024-10-22 05:33:38 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: lysine ubiquitylation, Quantitative proteome, Embryo, Seed Germination, Rice |
Contact List
Pingfang Yang |
contact affiliation | Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Sino-African Joint Research Center, Chinese Academy of Sciences, Wuhan 430074, China |
contact email | yangpf@wbgcas.cn |
lab head | |
Dongli He |
contact affiliation | Wuhan Botanic Garden |
contact email | hedongli@wbgcas.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD006526 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006526
- Label: PRIDE project
- Name: Quantitative Proteomic Atlas Uncovering the widespread Ubiquitylation regulation in the Embryo of Germinating Rice Seed