PXD006470-1

PXD006470 is an original dataset announced via ProteomeXchange.

Title	Label-free quantitative proteomic analysis of Mycobacterium avium hominissuis
Description	The objective of this study is to investigate the protein expression level difference between Mycobacterium avium hominissuis wild type strain MAH-104 , its mutant 21m (gene lysX (MAV_3128) mutated - Lysyl tRNA synthetase) and the complemented strain 21c (MAV_3128comp) using liquid chromatography-mass spectrometry (LC/MS) based label free quantitative proteomics analysis.
HostingRepository	PRIDE
AnnounceDate	2018-02-26
AnnouncementXML	Submission_2018-02-26_04:02:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jayaseelan Murugaiyan
SpeciesList	scientific name: Mycobacterium avium subsp. hominissuis; NCBI TaxID: 439334;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-09 23:31:12	ID requested
⏵ 1	2018-02-26 04:02:54	announced
2	2024-10-22 04:37:07	announced	2024-10-22: Updated project metadata.

Kirubakar G, Murugaiyan J, Schaudinn C, Dematheis F, Holland G, Eravci M, Weise C, Roesler U, Lewin A, Proteome Analysis of a M. avium Mutant Exposes a Novel Role of the Bifunctional Protein LysX in the Regulation of Metabolic Activity. J Infect Dis, 218(2):291-299(2018) [pubmed]

curator keyword: Biological

submitter keyword: Mycobacterium avium hominissuis, mutant, proteomic analysis, label free quantitative analysis, LTQ Orbitrap Velos mass spectrometer, Maxquant software, MaxQuant-Andromeda, Perseus software

Jayaseelan Murugaiyan
contact affiliation	Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Freie Universität Berlin, Robert-von-Ostertag-Str. 7-13, 14163 Berlin, Germany.
contact email	jayaseelan.murugaiyan@fu-berlin.de
lab head
Jayaseelan Murugaiyan
contact affiliation	Freie Universitaet-Berlin,Institute of Animal Hygiene and Environmental Health
contact email	jayaseelan.murugaiyan@fu-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD006470

PRIDE project URI

• PRIDE
  1. PXD006470
     1. Label: PRIDE project
     2. Name: Label-free quantitative proteomic analysis of Mycobacterium avium hominissuis