PXD006447 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Standard dataset of UPS1 spiked into yeast at various concentrations |
Description | A standard proteolytic digest of a human protein mixture, prepared at 1.5-fold to 3-fold protein concentration changes, and diluted into a constant background of yeast proteins. Similar to other datasets used for ground truth in quantitative studies, with the exception of being more granular, and much larger in terms of replicates, to enable more rigorous and accurate testing of quantitative algorithms. |
HostingRepository | PRIDE |
AnnounceDate | 2018-09-24 |
AnnouncementXML | Submission_2018-09-24_03:54:29.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Michael Hoopmann |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-05-04 00:12:43 | ID requested | |
⏵ 1 | 2018-09-24 03:54:30 | announced | |
2 | 2018-09-28 08:47:46 | announced | Updated publication reference for PubMed record(s): 30259924. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Technical |
submitter keyword: UPS1, yeast, standard, dilution series |
Contact List
Robert L. Moritz |
contact affiliation | Institute for Systems Biology |
contact email | robert.moritz@systemsbiology.org |
lab head | |
Michael Hoopmann |
contact affiliation | Institute for Systems Biology |
contact email | michael.hoopmann@systemsbiology.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD006447 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006447
- Label: PRIDE project
- Name: Standard dataset of UPS1 spiked into yeast at various concentrations