PXD006383 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human colon aspirate proteins analyzed by LC-MSMS |
Description | Colonic aspirates were collected at diagnostic colonoscopy from inflammatory bowel disease (IBD) and control, treatment-naive children. The colonic mucosal-luminal interface (MLI) proteomes were analyzed for 18 control and 42 IBD patients by liquid-chromatography mass spectrometry. |
HostingRepository | PRIDE |
AnnounceDate | 2018-03-19 |
AnnouncementXML | Submission_2018-03-19_03:43:58.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Shelley Deeke |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-04-26 01:42:55 | ID requested | |
⏵ 1 | 2018-03-19 03:44:00 | announced | |
Publication List
Deeke SA, Starr AE, Ning Z, Ahmadi S, Zhang X, Mayne J, Chiang CK, Singleton R, Benchimol EI, Mack DR, Stintzi A, Figeys D, Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis. Am J Gastroenterol, 113(5):713-724(2018) [pubmed] |
Keyword List
curator keyword: Biomedical |
submitter keyword: Human, LC-MSMS, colon aspirates |
Contact List
Daniel Figeys |
contact affiliation | Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada |
contact email | dfigeys@uottawa.ca |
lab head | |
Shelley Deeke |
contact affiliation | University of Ottawa |
contact email | sdeek076@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD006383 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006383
- Label: PRIDE project
- Name: Human colon aspirate proteins analyzed by LC-MSMS