PXD006366-2

PXD006366 is an original dataset announced via ProteomeXchange.

Title	Re-analysis of an ultra-deep and quantitative saliva proteome
Description	This is a re-analysis of the saliva metaproteome dataset by Grassl et al. (Grassl et al. 2016 Genome Med, 8(1):44 DOI: 10.1186/s13073-016-0293-0) available on ProteomeXchange PXD003028. The data was used as a case study for a method development study in which we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We used the fraction data from the original study for individuals 1 (female1), 3 (female3), 5 (male1), and 7 (male3).
HostingRepository	PRIDE
AnnounceDate	2017-05-12
AnnouncementXML	Submission_2017-11-22_08:35:42.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manuel Kleiner
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-04-24 06:08:46	ID requested
1	2017-05-11 23:34:22	announced
⏵ 2	2017-11-22 08:35:44	announced	Updated publication reference for PubMed record(s): 29146960.

Kleiner M, Thorson E, Sharp CE, Dong X, Liu D, Li C, Strous M, Assessing species biomass contributions in microbial communities via metaproteomics. Nat Commun, 8(1):1558(2017) [pubmed]

curator keyword: Metaproteomics, Biological

submitter keyword: metaproteomics, metaproteome, biomass assessment, oral microbiome

Marc Strous
contact affiliation	Department of Geoscience, University of Calgary
contact email	mstrous@ucalgary.ca
lab head
Manuel Kleiner
contact affiliation	University of Calgary
contact email	manuel.kleiner@ucalgary.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD006366

PRIDE project URI

• PRIDE
  1. PXD006366
     1. Label: PRIDE project
     2. Name: Re-analysis of an ultra-deep and quantitative saliva proteome