PXD006084 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Genes essential for phototrophic growth by a purple alphaproteobacterium |
| Description | We identified 171 genes required for growth in this condition, 35 of which are annotated as photosynthesis genes. As a complement to the genetic data, we carried out proteomics experiments in which we found that 429 proteins were present in significantly higher amounts in cells grown anaerobically in light compared to aerobically. Among these were proteins encoded by subset of the phototrophic growth-essential genes. |
| HostingRepository | PRIDE |
| AnnounceDate | 2024-10-22 |
| AnnouncementXML | Submission_2024-10-22_04:08:49.884.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD006084 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076; |
| ModificationList | Oxidation |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2017-03-13 04:37:10 | ID requested | |
| 1 | 2017-07-11 05:41:58 | announced | |
| ⏵ 2 | 2024-10-22 04:08:58 | announced | 2024-10-22: Updated project metadata. |
Publication List
| 10.1111/1462-2920.13852; |
| 10.6019/PXD006084; |
| Yang J, Yin L, Lessner FH, Nakayasu ES, Payne SH, Fixen KR, Gallagher L, Harwood CS, Genes essential for phototrophic growth by a purple alphaproteobacterium. Environ Microbiol, 19(9):3567-3578(2017) [pubmed] |
Keyword List
| curator keyword: Biological |
| submitter keyword: photosynthesis, bacteria, essential genes |
Contact List
| Carrie Harwood |
|---|
| contact affiliation | University of Washington, USA |
| contact email | csh5@uw.edu |
| lab head | |
| Matthew Monroe |
|---|
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD006084 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006084
- Label: PRIDE project
- Name: Genes essential for phototrophic growth by a purple alphaproteobacterium
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