PXD005944-1

PXD005944 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	On-bead vs FASP vs InGel sample preparation for LC-MS/MS
Description	The aim of this project was to compare and optimize sample processing protocols up-stream of LC-MS/MS. We set out to create a protocol that is easier and less laborious to use with liquid handlers than FASP, but that generates comparable results as FASP or traditional in-gel digestion.
HostingRepository	PRIDE
AnnounceDate	2018-07-19
AnnouncementXML	Submission_2018-07-19_03:39:35.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Krzysztof Sikorski
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-02-21 05:26:54	ID requested
⏵ 1	2018-07-19 03:39:36	announced
2	2024-10-22 04:36:15	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

curator keyword: Technical
submitter keyword: FASP, on-bead digestion, GelFree, LC-MS/MS

curator keyword: Technical

submitter keyword: FASP, on-bead digestion, GelFree, LC-MS/MS

Contact List

Fridtjof Lund-Johansen
contact affiliation	Dept. of Immunology, Oslo University Hospital Rikshospitalet, Oslo, Norway
contact email	fridtjol@gmail.com
lab head
Krzysztof Sikorski
contact affiliation	K.G. Jebsen Center for Cancer Immunotherapy, Oslo, Norway
contact email	krzysztof.sikorski@medisin.uio.no
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD005944
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD005944

PRIDE project URI

Repository Record List

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