PXD005733-2

PXD005733 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparison of Lung Cancer Proteome Profiles 4: DDA
Description	The goal of this project is to compare label free quantification, chemical labeling with tandem mass tags, and data independent acquisition discovery proteomics approaches using lung squamous cell carcinomas and adjacent lung tissues. This additional single sample LC-MS/MS analysis with data dependent acquisition was performed to enable direct comparison to the PRIDE dataset, titled, "Comparison of Lung Cancer Proteome Profiles 3: DIA," where single samples were analyzed with LC-MS/MS using data independent acquisition.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:35:48.085.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005733
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	John Koomen
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-17 05:34:43	ID requested
1	2017-02-16 07:29:26	announced
⏵ 2	2024-10-22 04:35:52	announced	2024-10-22: Updated project metadata.

Publication List

Stewart PA, Fang B, Slebos RJ, Zhang G, Borne AL, Fellows K, Teer JK, Chen YA, Welsh E, Eschrich SA, Haura EB, Koomen JM, Relative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms. Proteomics, 17(6):(2017) [pubmed]
10.6019/PXD005733;
10.1002/pmic.201600300;

Stewart PA, Fang B, Slebos RJ, Zhang G, Borne AL, Fellows K, Teer JK, Chen YA, Welsh E, Eschrich SA, Haura EB, Koomen JM, Relative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms. Proteomics, 17(6):(2017) [pubmed]

10.6019/PXD005733;

10.1002/pmic.201600300;

Keyword List

curator keyword: Biomedical
submitter keyword: Data dependent acquisition,Lung cancer, discovery proteomics, LC-MS/MS, single sample analysis

curator keyword: Biomedical

submitter keyword: Data dependent acquisition,Lung cancer, discovery proteomics, LC-MS/MS, single sample analysis

Contact List

John Koomen, PhD
contact affiliation	Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center Tampa, FL, USA
contact email	john.koomen@moffitt.org
lab head
John Koomen
contact affiliation	Moffitt Cancer Center
contact email	john.koomen@moffitt.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/02/PXD005733
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/02/PXD005733

PRIDE project URI

Repository Record List

[ + ]