PXD005555 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Mouse glycoproteome |
Description | Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than those of routine proteomic studies. Here, we introduce a workflow that robustly identifies intact glycopeptides at a proteome scale using stepped-energy mass-spectrometry (MS) and pGlyco 2.0, a dedicated search engine for large-scale glycopeptide analysis with comprehensive quality control (false discovery rate evaluation on the glycan, peptide and glycopeptide matches). |
HostingRepository | PRIDE |
AnnounceDate | 2017-10-11 |
AnnouncementXML | Submission_2017-10-10_23:50:01.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | pGlyco pFind |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-12-13 00:22:10 | ID requested | |
⏵ 1 | 2017-10-10 23:50:03 | announced | |
Publication List
Liu MQ, Zeng WF, Fang P, Cao WQ, Liu C, Yan GQ, Zhang Y, Peng C, Wu JQ, Zhang XJ, Tu HJ, Chi H, Sun RX, Cao Y, Dong MQ, Jiang BY, Huang JM, Shen HL, Wong CCL, He SM, Yang PY, pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification. Nat Commun, 8(1):438(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Mouse glycoproteome |
Contact List
Mingqi Liu |
contact affiliation | Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China |
contact email | mingqiliu10@icloud.com |
lab head | |
pGlyco pFind |
contact affiliation | Institute of Computing Technology, CAS, Beijing, China |
contact email | pglyco@ict.ac.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/10/PXD005555 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005555
- Label: PRIDE project
- Name: Mouse glycoproteome