PXD005555-1

PXD005555 is an original dataset announced via ProteomeXchange.

Title	Mouse glycoproteome
Description	Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than those of routine proteomic studies. Here, we introduce a workflow that robustly identifies intact glycopeptides at a proteome scale using stepped-energy mass-spectrometry (MS) and pGlyco 2.0, a dedicated search engine for large-scale glycopeptide analysis with comprehensive quality control (false discovery rate evaluation on the glycan, peptide and glycopeptide matches).
HostingRepository	PRIDE
AnnounceDate	2017-10-11
AnnouncementXML	Submission_2017-10-10_23:50:01.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	pGlyco pFind
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2016-12-13 00:22:10	ID requested
⏵ 1	2017-10-10 23:50:03	announced

Liu MQ, Zeng WF, Fang P, Cao WQ, Liu C, Yan GQ, Zhang Y, Peng C, Wu JQ, Zhang XJ, Tu HJ, Chi H, Sun RX, Cao Y, Dong MQ, Jiang BY, Huang JM, Shen HL, Wong CCL, He SM, Yang PY, pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification. Nat Commun, 8(1):438(2017) [pubmed]

curator keyword: Biological

submitter keyword: Mouse glycoproteome

Mingqi Liu
contact affiliation	Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China
contact email	mingqiliu10@icloud.com
lab head
pGlyco pFind
contact affiliation	Institute of Computing Technology, CAS, Beijing, China
contact email	pglyco@ict.ac.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/10/PXD005555

PRIDE project URI

• PRIDE
  1. PXD005555
     1. Label: PRIDE project
     2. Name: Mouse glycoproteome