PXD005506-2

PXD005506 is an original dataset announced via ProteomeXchange.

Title	HipSci project proteomics batch 1, comprising 6 IPS cell lines from 3 donors
Description	The Human Induced Pluripotent Stem Cells Initiative (HipSci) is generating a large, high-quality reference panel of human IPSC lines. This is a submission of mass-spectrometry analyses from 6 induced pluripotent stem cell lines generated by the HipSci project.
HostingRepository	PRIDE
AnnounceDate	2017-06-20
AnnouncementXML	Submission_2017-06-20_05:44:11.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	HipSci Project
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	deamidated residue; oxidized residue; phosphorylated residue; S-carboxamidomethyl-L-cysteine; Acetyl; methylated lysine; N-acylated residue
Instrument	Q Exactive; Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2016-12-06 02:45:30	ID requested
1	2017-05-12 01:18:52	announced
⏵ 2	2017-06-20 05:44:12	announced	Updated project metadata.
3	2017-10-24 04:53:38	announced	Updated project metadata.
4	2024-10-22 04:31:28	announced	2024-10-22: Updated project metadata.

Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ, Common genetic variation drives molecular heterogeneity in human iPSCs. Nature, 546(7658):370-375(2017) [pubmed]

ProteomeXchange project tag: Human Induced Pluripotent Stem Cells Initiative

curator keyword: Biomedical, Biological

submitter keyword: Human, IPS cells, pluripotent, TMT, Tandem Mass Tag

Angus Lamond
contact affiliation	College of Life Sciences, University of Dundee
contact email	a.i.lamond@dundee.ac.uk
lab head
HipSci Project
contact affiliation	Human Induced Pluripotent Stem Cells Initiative Human Induced Pluripotent Stem Cells Initiative Human Induced Pluripotent Stem Cells Initiative
contact email	hipsci@ebi.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD005506

PRIDE project URI

• PRIDE
  1. PXD005506
     1. Label: PRIDE project
     2. Name: HipSci project proteomics batch 1, comprising 6 IPS cell lines from 3 donors