PXD005303-1

PXD005303 is an original dataset announced via ProteomeXchange.

Title	In-depth proteome analysis of FFPE mammary secretory carcinoma specimens
Description	Mammary secretory carcinoma (MSC) is one of the rarest types of breast cancer accounting for less than 0.15% of all breast cancers. Traditionally, MSC is considered that it belongs to the phenotypic spectrum of basal-like triple-negative breast carcinoma (BL-TNBC). Here, we present a study of MSC formalin-fixed paraffin embedded (FFPE) tissue specimens using novel in-depth quantitative proteomic strategy.
HostingRepository	PRIDE
AnnounceDate	2018-02-27
AnnouncementXML	Submission_2018-02-27_05:56:34.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dohyun Han
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-11-09 04:58:20	ID requested
⏵ 1	2018-02-27 05:56:35	announced
2	2024-10-22 04:33:16	announced	2024-10-22: Updated project metadata.

Jin MS, Lee H, Woo J, Choi S, Do MS, Kim K, Song MJ, Kim Y, Park IA, Han D, Ryu HS, Integrated Multi-Omic Analyses Support Distinguishing Secretory Carcinoma of the Breast from Basal-Like Triple-Negative Breast Cancer. Proteomics Clin Appl, 12(5):e1700125(2018) [pubmed]

curator keyword: Biomedical

submitter keyword: secretory carcinoma, FFPE, TMT, quantitative proteomics

Dohyun Han
contact affiliation	Proteomics core facility, Seoul National University Hospital
contact email	hdh03@snu.ac.kr
lab head
Dohyun Han
contact affiliation	Colleage of medicine
contact email	hdh03@snu.ac.kr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD005303

PRIDE project URI

• PRIDE
  1. PXD005303
     1. Label: PRIDE project
     2. Name: In-depth proteome analysis of FFPE mammary secretory carcinoma specimens