PXD004911 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Mouse caecum vs faeces |
Description | We compared the microbiota of paired mouse caecal contents and faeces by applying a multi-omic approach, including 16S rDNA sequencing, shotgun metagenomics, and shotgun metaproteomics. The aim of the study was to verify whether faecal samples are a reliable proxy for the mouse colonic luminal microbiota, as well as to identify changes in taxonomy and functional activity between caecal and faecal microbial communities, which have to be carefully considered when using stool as sample for mouse gut microbiota investigations. |
HostingRepository | PRIDE |
AnnounceDate | 2017-06-20 |
AnnouncementXML | Submission_2017-06-20_05:44:35.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Alessandro Tanca |
SpeciesList | scientific name: mouse gut metagenome; NCBI TaxID: 410661; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-09-10 15:22:31 | ID requested | |
1 | 2017-03-31 01:21:32 | announced | |
⏵ 2 | 2017-06-20 05:44:36 | announced | Updated project metadata. |
3 | 2017-10-24 04:06:42 | announced | Updated project metadata. |
Publication List
Tanca A, Manghina V, Fraumene C, Palomba A, Abbondio M, Deligios M, Silverman M, Uzzau S, Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. Front Microbiol, 8():391(2017) [pubmed] |
Keyword List
curator keyword: Metaproteomics, Biological |
submitter keyword: gut microbiota, mouse, caecum, faeces, metaproteomics |
Contact List
Sergio Uzzau |
contact affiliation | Porto Conte Ricerche, Alghero, Sardinia, Italy |
contact email | uzzau@portocontericerche.it |
lab head | |
Alessandro Tanca |
contact affiliation | Proteomics Laboratory, Porto Conte Ricerche, Alghero, Italy |
contact email | tanca@portocontericerche.it |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD004911 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004911
- Label: PRIDE project
- Name: Mouse caecum vs faeces