PXD004902-5

PXD004902 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Matsumoto_Verification of MRM assays using in vitro proteome
Description	MS/MS spectra assigned to peptides with more than six amino acids were selected from our database and converted into MRM transitions. Overlapping ions with a difference in mass/charge ratio (m/z) of 400 were preferentially selected
HostingRepository	jPOST
AnnounceDate	2016-12-03
AnnouncementXML	Submission_2021-02-04_16:05:15.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Masaki Matsumoto
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	mTRAQ:13C(3)15N(1); mTRAQ:13C(6)15N(2); mTRAQ:13C(3)15N(1); S-carboxamidomethyl-L-cysteine
Instrument	Q TRAP

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-30 02:10:15	ID requested
1	2016-12-02 15:55:25	announced
2	2017-08-08 15:54:02	announced	Updated PubMed.
3	2018-09-18 21:37:51	announced	Updated PubMed.
4	2018-09-18 21:47:46	announced	Updated CV, FTP location and Modification list.
⏵ 5	2021-02-04 16:05:16	announced	2021-02-04: Updated FTP location.
6	2022-09-18 01:57:40	announced	2022-09-18: Updated FTP location.

Publication List

Matsumoto M, Matsuzaki F, Oshikawa K, Goshima N, Mori M, Kawamura Y, Ogawa K, Fukuda E, Nakatsumi H, Natsume T, Fukui K, Horimoto K, Nagashima T, Funayama R, Nakayama K, Nakayama KI, A large-scale targeted proteomics assay resource based on an in vitro human proteome. Nat Methods, 14(3):251-258(2017) [pubmed]

Matsumoto M, Matsuzaki F, Oshikawa K, Goshima N, Mori M, Kawamura Y, Ogawa K, Fukuda E, Nakatsumi H, Natsume T, Fukui K, Horimoto K, Nagashima T, Funayama R, Nakayama K, Nakayama KI, A large-scale targeted proteomics assay resource based on an in vitro human proteome. Nat Methods, 14(3):251-258(2017) [pubmed]

Keyword List

submitter keyword: MRM verification

submitter keyword: MRM verification

Contact List

Masaki Matsumoto
lab head
Masaki Matsumoto
contact affiliation	Div. Proteomics, Med. Inst. Bioreg., Kyushu Univ.
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000004

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000004