PXD004355-2

PXD004355 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Characterization of protein deamidation by shotgun proteomics
Description	Characterization of glutamine (Gln) deamidation with the current available methods is only feasible for single compounds or simple mixtures. Here we have developed a new method to analyze in depth Gln and asparagine (Asn) deamidation from complex biological samples by shotgun proteomics.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:30:17.160.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Aida Serra
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue; deamidated residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-06-17 06:50:08	ID requested
1	2018-07-04 06:37:06	announced
⏵ 2	2024-10-22 04:30:17	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

curator keyword: Technical, Biological
submitter keyword: deamidation, brain, PTM, shotgun, DPM, glutamic acid

curator keyword: Technical, Biological

submitter keyword: deamidation, brain, PTM, shotgun, DPM, glutamic acid

Contact List

Sze Siu Kwan
contact affiliation	Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg
contact email	sksze@ntu.edu.sg
lab head
Aida Serra
contact affiliation	School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551.
contact email	aserramaq@ntu.edu.sg
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD004355
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD004355

PRIDE project URI

Repository Record List

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