PXD004118 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease |
Description | Rice is the major staple food for more than half of world's population. As global climate changes, we are observing more floods, droughts and severe heat waves. Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study. Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7 days, followed by 3 days of re-watering. Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting. Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance. Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by up regulating a suite of stress and defence response related proteins. Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources. |
HostingRepository | PRIDE |
AnnounceDate | 2018-01-31 |
AnnouncementXML | Submission_2019-01-21_03:16:51.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yunqi Wu |
SpeciesList | scientific name: Rice(O. sativa); NCBI TaxID: 4530; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-05-09 04:04:02 | ID requested | |
1 | 2018-01-31 00:20:28 | announced | |
⏵ 2 | 2019-01-21 03:16:53 | announced | Updated publication reference for PubMed record(s): 27195813, 30656201. |
3 | 2024-10-22 04:30:25 | announced | 2024-10-22: Updated project metadata. |
Publication List
Wu Y, Mirzaei M, Atwell BJ, Haynes PA, Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery. Data Brief, 22():697-702(2019) [pubmed] |
Wu Y, Mirzaei M, Pascovici D, Chick JM, Atwell BJ, Haynes PA, Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease. J Proteomics, 143():73-82(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Abiotic stress / Drought tolerance / Plant proteomics / Rice / Shotgun proteomics / ClpD1 protease |
Contact List
Paul A. Haynes |
contact affiliation | Department of Chemistry and Biomolecular Sciences, Faculty of Science and Engineering, Macquarie University |
contact email | paul.haynes@mq.edu.au |
lab head | |
Yunqi Wu |
contact affiliation | Macquarie University |
contact email | yunqi.wu@mq.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004118
- Label: PRIDE project
- Name: Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease